BtaEX0023058 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011585 | MST1
Description
macrophage stimulating 1 [Source:HGNC Symbol;Acc:HGNC:7380]
Coordinates
chr22:51081931-51082457:+
Coord C1 exon
chr22:51081931-51082043
Coord A exon
chr22:51082124-51082238
Coord C2 exon
chr22:51082321-51082457
Length
115 bp
Sequences
Splice sites
3' ss Seq
TCTGGGTCTTTTGCTCCCAGACT
3' ss Score
7.51
5' ss Seq
CAAGTGAGA
5' ss Score
5.26
Exon sequences
Seq C1 exon
GGCCTTCCACTACAACTTGAGCAGCCATGGTTGCCAGTTGCTGCCATGGACCCAGCACTCACCTCATACACGACTGCAGCGTTCCGGGCGCTGTGACCTCTTCCAAAAGAAAA
Seq A exon
ACTATGTTCGCACCTGCATCGTGGACAACGGGGTCGAGTACCGGGGCACTGTGGCCATCACCGTGGGTGGCTTACCCTGCCAGCGCTGGAGCCACAGGTTTCCCAATGACCACAA
Seq C2 exon
GTTCACACCCACACTCCGGAACGGCTTGGAGGAGAACTTCTGCCGCAACCCGGACAGGGACCCGGGAGGTCCCTGGTGCTATACAACCGACCCTGCCGTGCGCTTCCAGAGCTGCGGCATAAAGTCCTGCCGAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011585-'3-3,'3-2,4-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.043
Domain overlap (PFAM):
C1:
PF0002421=PAN_1=FE(45.8=100)
A:
PF0002421=PAN_1=PD(1.2=2.6),PF0005113=Kringle=PU(42.9=84.6)
C2:
PF0005113=Kringle=PD(55.8=91.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACTACAACTTGAGCAGCCA
R:
CCTCTCGGCAGGACTTTATGC
Band lengths:
244-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development