HsaEX0040646 @ hg19
Exon Skipping
Gene
ENSG00000102043 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:16825]
Coordinates
chrX:63487961-63548780:-
Coord C1 exon
chrX:63548652-63548780
Coord A exon
chrX:63490827-63490953
Coord C2 exon
chrX:63487961-63488923
Length
127 bp
Sequences
Splice sites
3' ss Seq
CCCATTTTTGTCTATTTGAGGTT
3' ss Score
8.47
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
AGTCTATGAGAAAACACATTCTGTGTGGCCTTTCTTGGTTCAGAGGAAACCAGACTTCAGGAACCCTCTCTATAAAGGCTTCACTATGTATGGGGTACTCAATCCTAGTACTGTGCCCTACAACATTCA
Seq A exon
GTTCTGGTGTGGGATGTATAACCGCTTTGACAAAGGGCTGCAGCCCAAGCAGAGTATGCTAGAGAGCCTCCTGGAAATTAAGAAACAGAGAGCAATGCTGGAGACAGATGTGCATGAACTAGAAAAG
Seq C2 exon
AAACTAAAAGTCCGTGATGAGCCACCAGAAGAGATCTGTACCTGCTCTCAATTAGGAAACATATTATCCCAGCATCTGGGAAGTCCTTTGACCAATCCTCTTGGCTTTATGGGTATCAATGGAGACCTGAATACCCTGATGGAGAATGGCACCCTATCCAGGGAAGGAGGCCTCCGAGCTCAGATGGATCAAGTAAAAAGCCAGGGTGCAGACCTCCACCATAACTGTTGTGAGATTGTGGGCAGCCTTAGGGCCATAAATATCTCTGGGGATGTGGGCATCTCTGAGGCCATGGGCATCTCTGGAGACATGTGCACCTTTGAGGCTACGGGCTTCTCCAAAGACTTAGGAATCTGTGGGGCCATGGACATCTCTGAGGCCACTGGCATCTCTGGAAACTTGGGTATTTCTGAGGCCAGGGGTTTCTCTGGGGACATGGGCATCTTGGGGGACACAGGCATCTCCAAGGCCAGCACCAAGGAGGCAGACTACTCCAAGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000102043-'17-18,'17-17,18-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.023 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGACTTCAGGAACCCTCT
R:
GAGGCCTCCTTCCCTGGATAG
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)