GgaEX6033527 @ galGal4
Exon Skipping
Gene
ENSGALG00000007590 | MTMR8
Description
myotubularin-related protein 8 [Source:RefSeq peptide;Acc:NP_001012717]
Coordinates
chr4:11599413-11607672:+
Coord C1 exon
chr4:11599413-11599541
Coord A exon
chr4:11600471-11600597
Coord C2 exon
chr4:11602489-11607672
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGCCCTGTTCTTAAGGTT
3' ss Score
8.43
5' ss Seq
AATGTGAGT
5' ss Score
7.8
Exon sequences
Seq C1 exon
AATCTTTGAGAAGACCCACTCTCTGTGGCCTTTCCTCTTACAGAAGAAGCAGGAATTGAGAAATCCTTTGTACAGAGGATTTACAGCTTACAAAGAGCTTCAACCCAACACGCTACCTTTTAGTTTTCA
Seq A exon
GTTTTGGTGTGGGATGTACAATCGCTTCGACAAAGGAATGCATCCAAAACAGTGTGTACTGGATCATCTACTGAGCTGCATGAACCAGAAGATAAAACTAGAGGACAATGCATCTGAATTGGAAAAT
Seq C2 exon
AAACTTCCTTTCCTTGATGGTCCGTTACCCAATGAAGCTTGCTTCTTATCTAAAGTAGGATGTGCTGCTTCAAAAACACCGATGCTGAACACTCCCCAGGATTATGAAGGGGAAGCACCTCCTGTGTTGACCAACGGTATCTCAGTTGGAGATATAAATGTTACGTCAGATGTGGACCAGAGAAACAAAGAGAACCTGGCTAATCACCGAGACCTCCATCTTAATGACAGCGTTGATGTTTTAAACTCTGAAGCTAAGGATGGAAAGCCTCAGCACCATTGATCGGCTTTGAGAATTGTGTTCAATGAAGCAGGTGCTTGCGAGGCATAAAGGATCTGTGACCCTGCCCAGGTGTAGACCACCCAGCCAGTTCCTGCTATGCATTACTGTGTATGTTTGCGGGGAGCTGTGCTCTCGCTGTAGCGAGCGCAGTCCATGTTTGGTTTGGTTTGCATCATTTTGGGGCTAAAATGATGAAGACACATACAGAGCTGCTGAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007590-'19-17,'19-16,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTTCAACCCAACACGCTA
R:
GGAGGTCTCGGTGATTAGCCA
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]