RnoEX0056451 @ rn6
Exon Skipping
Gene
ENSRNOG00000012918 | Mtmr6
Description
myotubularin related protein 6 [Source:RGD Symbol;Acc:1305378]
Coordinates
chr15:40592987-40597309:+
Coord C1 exon
chr15:40592987-40593118
Coord A exon
chr15:40593992-40594118
Coord C2 exon
chr15:40595306-40597309
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGAACTTCTTTGTCATAAAGATT
3' ss Score
3.69
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTGAAGGAGAAGACTTACTCCCTGTGGCCTTTTCTTTTGGCTGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGATTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
Seq A exon
ATTTTGGAGAAACATGTACCACCAATTTGATCGGACGCTCCATCCCCGGCAGTCTGTACTGAACATAATTATGAATATGAATGAGCAAAACAAGCAGTTAGAGGAAGACGTTAAAGACCTAGAGGCT
Seq C2 exon
AAAATTAAGCAATGCAAAAGTGGCATCCTGACGAAGGACTTGCTGCATGCCGTTCACCCTGAGTCGCCCAGTCTGAAAACCTCACTGTGTCTGAAAGAGCAGAGTCTGCTCCCGGTGAAGGACACACTCCGAGCTGTAGAGGGCAGCAGCCCAGCAGATAATCGCTACTGTGACTACACCGAGGAGTTTTCCAAGTCGGAGCCTGCTGTGGTCAGCTTGGAGTACGGCGTGGCCCGAATGACTTGTTAGCCTCCTTCAGTGGTCCCTGGATGGCTGTAGTGTGAGAAGGGTCTGTACACACGGGCAGGAGGTCTGAGTGACTTAGGGGCTTAGCAGCAGGTGAATAGCTGAGAAAAGGTAGCAGCTCTTGGGAGGAGTAAGTCAGCCAAGTGCCACTGGCAGCGAGCGAGTGCTGTTGTGTGTGCTTCCTGGAAATGATTTACACAGTGCTAGTGAGCTGGCAGTCTGTTGATTCAGATGTTAATTACAGCCAAACTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012918_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
PF097894=DUF2353=FE(36.7=100),PF060089=Laminin_I=PU(29.2=68.9)
A:
PF097894=DUF2353=FE(35.0=100),PF060089=Laminin_I=FE(39.6=100)
C2:
PF097894=DUF2353=PD(12.5=18.1),PF060089=Laminin_I=PD(29.2=37.3)
Main Skipping Isoform:
ENSRNOT00000082665fB9115
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGTGGCCTTTTCTTTTGGC
R:
TACAGCTCGGAGTGTGTCCTT
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]