GgaEX1037496 @ galGal3
Exon Skipping
Gene
ENSGALG00000017112 | MTMR6
Description
NA
Coordinates
chr1:181407084-181409910:+
Coord C1 exon
chr1:181407084-181407218
Coord A exon
chr1:181407295-181407421
Coord C2 exon
chr1:181409415-181409910
Length
127 bp
Sequences
Splice sites
3' ss Seq
AAACTGTCTGCTACATGCAGGTT
3' ss Score
5.84
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTTAAAAGAGAAGACATATTCCCTGTGGCCTTTCCTTCTAGATGAACAAAAGAAATACCAGAATCCTCTGTATAATCCAAGTTTTTCTCCGAATCTAACTCTTTTGGAGCCTAATACTGTGTCATTCAATTTCAA
Seq A exon
GTTTTGGAGAAATATGTACCATCAGTTTGACCGAAGCATGCATCCCAGGCAGTCTGTGTATGATCTTATCATGGACATGAGTGAACAAAATAAACAACTGGAGGAAGACATTAAACAACTGGAAGCT
Seq C2 exon
AAAATAAAGCGGAAGAGTGGGCAGTCAGATGTAGTCCTCCTGAAGGAACATCAGCAGTCTGCTCATCCTGCACCAGTGATGCTGAAAACCCCGCCGTGCTTCAAGAAGGACCAGCCTTTGATCCCTCTCAATGATGCTGTAAGAACTATAGAGGGCAGCAACACAGCAGACAATCGCTACAGTGAATTCATGGAAGAGCTTTCAAAAGCTGAGCCTGCTATTGTCAGCTTGGAGTATGGAGTGGCCAGGATGACCTGTTGAAATCTGGCACAGTGCTCCTCTGTCTTAGACTGGCTGAGTTAAAAGACAGATTGTTTTTGAGGATGGGTCTGTGCTGCATGACCAAAACATGATTTGTATATTGGCAAGTTTTGTTGACGTAGACTAGAACAGCATGCTAGTTGTCAGGTGTTTGCTGTTCTTTATACGCATATAAAAAAGTGTAGTTGCCTCTATTTCTTTTAAAATACACTTGGTAAGTAGTGACTAAAAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000017112-'14-17,'14-14,15-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.186 C2=0.256
Domain overlap (PFAM):
C1:
PF097894=DUF2353=FE(31.7=100)
A:
PF097894=DUF2353=FE(29.6=100),PF130941=CENP-Q=PU(22.8=48.8)
C2:
PF097894=DUF2353=PD(25.4=41.4),PF130941=CENP-Q=PD(75.0=79.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCCTGTGGCCTTTCCTTCT
R:
TGAGAGGGATCAAAGGCTGGT
Band lengths:
247-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]