HsaEX0040631 @ hg19
Exon Skipping
Gene
ENSG00000139505 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:7453]
Coordinates
chr13:25820339-25826122:-
Coord C1 exon
chr13:25825991-25826122
Coord A exon
chr13:25825787-25825913
Coord C2 exon
chr13:25820339-25823630
Length
127 bp
Sequences
Splice sites
3' ss Seq
AACTTTTTTTTGTCATAAAGGTT
3' ss Score
6.14
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTGAAGGAGAAGACTTATTCCCTGTGGCCATTTCTTTTGGAAGACCAAAAGAAGTACTTAAATCCTCTCTACAGTTCCGAATCTCACAGATTTACAGTTTTGGAGCCAAATACAGTATCTTTCAATTTTAA
Seq A exon
GTTTTGGAGGAACATGTACCATCAATTTGATCGAACACTGCATCCTAGGCAGTCTGTATTTAATATAATTATGAATATGAATGAGCAAAATAAACAATTAGAGAAAGATATTAAAGACCTAGAATCT
Seq C2 exon
AAAATTAAACAACGCAAAAATAAGCAAACAGATGGCATCCTCACCAAGGAATTGTTACATTCAGTTCATCCTGAATCACCTAACCTCAAAACTTCCCTGTGTTTTAAAGAGCAGACTCTGCTACCCGTAAATGATGCTCTTCGAACTATAGAGGGCAGCAGCCCGGCAGATAATCGTTATAGTGAATATGCAGAAGAGTTTTCTAAATCAGAACCTGCTGTGGTCAGCTTAGAGTATGGTGTGGCAAGAATGACTTGTTAGACTCATAGAGTTTTTTCTGCAATGATTGCAGTACAAGAAAAGGATTATTGTGAGGATGGTCTGTAAGCATAACCAAAAGGAATTTGTCTAATAACAATTTTAGGGTTTAACAGTAGGCTAATAGTTGAAGGAAGGATAATAACTACCCTTGTGAGAGAAATAAGTCATTTTAATTGCATTTCCAGCAAGGAATGACATTCAGTTCTGTAAGAAATGAGTGGTATTTGATGTATTTACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000139505-'16-18,'16-17,17-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.000 A=0.233 C2=0.267
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGGCCATTTCTTTTGG
R:
TCGAAGAGCATCATTTACGGGT
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)