MmuEX6041911 @ mm9
Exon Skipping
Gene
ENSMUSG00000021987 | Mtmr6
Description
myotubularin related protein 6 [Source:MGI Symbol;Acc:MGI:2145637]
Coordinates
chr14:60916900-60921207:+
Coord C1 exon
chr14:60916900-60917031
Coord A exon
chr14:60917752-60917878
Coord C2 exon
chr14:60919110-60921207
Length
127 bp
Sequences
Splice sites
3' ss Seq
TAAACTTCTTTGTCATAAAGGTT
3' ss Score
5.36
5' ss Seq
GCTGTGAGT
5' ss Score
7.39
Exon sequences
Seq C1 exon
GTTAAAGGAGAAAACTTACTCCCTGTGGCCTTTTCTTTTGGATGACAAAAAGAAGTACTTAAATCCTCTCTACAGTTCCAAATCTCAGAGACTGACAGTCTTGGAGCCAAATACAGCCTCTTTCAATTTTAA
Seq A exon
GTTTTGGAGAAACATGTACCACCAGTTTGATCGGACGCTCCATCCTCGGCAGTCTGTGCTGAGCATAATTATGAATATGAATGAGCAAAGCAAGCAGTTAGAGGAAGACATTAAAGACCTCGAGGCT
Seq C2 exon
AAAATTAAGCAATGCAAAAATGGCATCCTAACGAAGGAGTTGCTGCATGCTGTCCACCCTGAATCACCTGCCCTGAAAACCTCGCTGTGTCTCAAAGAGCCGAGTCTGCTTCCCGTGAAGGACACACTCCGAGCTATAGAGGGCAGCAGCCCAGCAGATAATCGCTACTGTGACTATGCCGAGGAATTTTCTAAGTCGGAGCCTACCGTGGTCAGCTTGGAGTACGGGGTGGCCAGAATGACTTGTTAGCCTCCTTCCGTGATCCCTGGATGACTGTAGTGTAAGAAATGTATAGTTGTGAGGATGGTCTGTACACATGGGCAGGAGGGGTTGTTGAGTGACTTTGGGGCTTAGCAGTAAGTGAGAAAGTAGGTAGCTGAGAAAAGGATCATAGCAACTCTTGAGAGGAGTGAGTCAGCTAAGTGCCATTTGTAACAAGAACATACTCATTTCTGTAGGAAGTGAGTGCTAGTGTGTGTATGTACTGGAAAGGGGTTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000021987-'15-16,'15-15,16-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF060089=Laminin_I=PU(31.1=71.1),PF102434=MIP-T3=PU(3.3=4.4)
A:
PF060089=Laminin_I=FE(40.8=100),PF102434=MIP-T3=FE(70.0=100)
C2:
PF060089=Laminin_I=PD(26.2=32.5),PF102434=MIP-T3=PD(23.3=16.9)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGGCCTTTTCTTTTGG
R:
GCCCTCTATAGCTCGGAGTGT
Band lengths:
256-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: