DreEX6095186 @ danRer10
Exon Skipping
Gene
ENSDARG00000016794 | mtmr6
Description
myotubularin related protein 6 [Source:ZFIN;Acc:ZDB-GENE-030131-5557]
Coordinates
chr24:24907759-24914365:+
Coord C1 exon
chr24:24907759-24907893
Coord A exon
chr24:24909702-24909828
Coord C2 exon
chr24:24913432-24914365
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTTTTGTTTTGTTTTTGCAGGTT
3' ss Score
11.05
5' ss Seq
ACTGTGAGT
5' ss Score
7.94
Exon sequences
Seq C1 exon
GTTGAAGGAGAGGACGTATTCATTGTGGGCTCACCTTCTGAGTGAAAAGCAGAACTACTTGAACCCCGTGTACAGCCCAAGCTTTGCAGAATCACAACCCGTTTTGGAACCATCCACTCAGGCCTACCACTTCAA
Seq A exon
GTTCTGGAGGAACATGTACCATCAGTATGACCGCTCCCTGCACCCTCGGCAGTCCATTCTCAAAAACGTTCTCACCTTGAAGGAAAGCAACCGAGAGCTCGAGGGCACAGTTCAAGCCCTGAAGACT
Seq C2 exon
AAGCTGCAGAATTTAGGTGTGAGCACGTCTCCACTGAAGCCCCAGACGCCCCCGAGAGAGCGCAGCCTCCCTCCCCGACCTCGCTCTCTCATCCTGGGCGCTCCTCTTCTCGGCCGAAAGGACGTGCAGCAGGACGAGGATGAGGAGATGTTTGCAGAGGAGGCCAGAGAGGATCCACCAGCTCTCACTGGAGGAGAACGGACTGTAGAGGGCAGGAGTGCCACAGAGAACGCTTATACAGAGCTGCCTGGATCATTCGGCTCCAGGAACGAACCAGCCATGGTCACGCTGGAGTTCGGGGTTGCCAGAATGACCTGCTAAAGACACGACACACAAGCTCATTTTTTCAGATTCAAGGATTGCAGGTGGACTGGAGATGATTAAGATTTGTAAACTCTGTAGTGAGAGAGAGGATGTTTGTTTGTGTGTGTGTATGTGTGCAGGTTTTGGTGGTTTTTGAGGACATAAAATTTGTTTAATGAATACTGTAGGTATTATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000016794-'12-17,'12-15,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.105 C2=0.883
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAAGCTTTGCAGAATCAC
R:
GTGAGAGCTGGTGGATCCTCT
Band lengths:
249-376
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]