BtaEX6056541 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003116 | MTMR6
Description
myotubularin related protein 6 [Source:HGNC Symbol;Acc:HGNC:7453]
Coordinates
chr12:34193894-34195480:+
Coord C1 exon
chr12:34193894-34194025
Coord A exon
chr12:34194127-34194253
Coord C2 exon
chr12:34195454-34195480
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTTTTTGTCATAAAGGTT
3' ss Score
7.64
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
GTTGAAGGAGAAGACATACTCCCTGTGGCCGTTTCTTCTGGACGACCAGAAGAAGTACCTCAATCCTCTCTACAGTTCCCAGTCTCAGAAATCGGCAGTTCTGGAGCCAAATACAGTGTCTTTCAATTTTAA
Seq A exon
GTTTTGGAGAAACATGTACCACCAGTTTGATCGAACATTGCATCCTAGGCAGTCTGTATTTAATATAATTATGAACATGAATGAGCAGAATAAGCAGTTAGAGAAAGATATCAAGGACTTAGAATCT
Seq C2 exon
GCAGGGCTGTTGCTGGTCGGCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003116-'20-16,'20-14,21-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ACATACTCCCTGTGGCCGTTT
R:
CTGAGAGCCGACCAGCAAC
Band lengths:
146-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]