BtaEX0023222 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000035705 | MTMR8
Description
myotubularin related protein 8 [Source:HGNC Symbol;Acc:HGNC:16825]
Coordinates
chrX:101288529-101491280:+
Coord C1 exon
chrX:101288529-101288657
Coord A exon
chrX:101446212-101446338
Coord C2 exon
chrX:101491189-101491280
Length
127 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTGTTTATTCAAGGTT
3' ss Score
9.54
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
AATATATGAGAAAACCCATTCAGTGTGGCCTTTCTTGGTTCAGAGGAAACCAGACTTCAGGAACCCTCTCTATAAAGGCTTCACTATGTATGGGGTACTAAATCCTAGTACTGTGCCCTACAACATTCA
Seq A exon
GTTCTGGTGTGGGATGTATAACCGCTTTGACAAAGGGTTGCAGCCCAAGCAGAGTATGCTAGAGAGCCTCCTGGAAATTAAGAAGCAGAGATCAATGCTGGAGGCAGATGTGCACAAACTAGAAAAG
Seq C2 exon
ATCTGGCATATCCTCCTGCTCATAATGAGAATAGTTCTGCTCCAATCAGCCAAGGTGAAAACCTCATGGACATCACCAAGATTTTCTCCCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000035705-'12-20,'12-18,14-20
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGAGAAAACCCATTCAGTGTGG
R:
GAGGGAGAAAATCTTGGTGATGTCC
Band lengths:
218-345
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development