DreEX0047928 @ danRer10
Exon Skipping
Gene
ENSDARG00000008592 | mtmr8
Description
myotubularin related protein 8 [Source:ZFIN;Acc:ZDB-GENE-040426-1016]
Coordinates
chr5:21523788-21528973:-
Coord C1 exon
chr5:21528845-21528973
Coord A exon
chr5:21528478-21528604
Coord C2 exon
chr5:21523788-21525159
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGTTTGTGTTGATTGCCAGGTT
3' ss Score
8.45
5' ss Seq
AGAGTAAGT
5' ss Score
9.35
Exon sequences
Seq C1 exon
GTTGCATGAAAAAACCTTTTCCCTGTGGCCGCATCTTCTGGAAAACCAGCATCAGTATCGAAACCCTTTGTACCGGCGCTCATTAGAAAGCACAGTTCTCAGACCAAGCACTTTACCACTACACTTCAA
Seq A exon
GTTCTGGTGTGGGATGTATAACCACTATGACAGAGGAATGCACCCAAAACAGTCTGTTCTAGACACGCTGCTGACTCTCACACAGAGGCAGGTAGAAGGAGAGAGAACCATGACTGAATTACAGAGA
Seq C2 exon
CAGCTGGCTGTTGCAGATGGAGTTCTTCCTGATCCAGCCGGACCAATCAACACACATGCAGACCAGAATAACCAAAGTGAGAAGATGCCTGCTCCTCCAGTCGTCCAATCAAATGGAAGCTGTGCTCCTTTGATCAATGGCAACGTGAAGGAGGTGGGGCCAGGAGCTGAAAACTCCAATCAGGAAGACAGGGAGGAGCCAGCTGCCAATGAACACGATCTGTCCTCTAAGGACAAACCTGTTTTTGTGGAAACAGAACATTCCAAAGAGGAGGTACAGGAATCCTCTTGAGTCGCCATAGTGTTAGCACATCAGCCGTTAGGACTGAAATGCCAAAGAACAAATGAAAGCATGCATAAAGTTGTGTTCCCACAACAGAAGCCATCGCAATAGAAAAAAAAACAATCATTTAAACGGCAGTGTTCTTCTGCACACCATGTTGTGATGGTGTACTGATGTTTCTATCACTGTGTGGATTGTTTTGTCCAGTTATATCTGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000008592-'20-17,'20-16,22-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.465 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TACCGGCGCTCATTAGAAAGC
R:
GCTCCTCCCTGTCTTCCTGAT
Band lengths:
258-385
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]