RnoEX6055668 @ rn6
Exon Skipping
Gene
ENSRNOG00000011420 | Mtmr7
Description
myotubularin related protein 7 [Source:RGD Symbol;Acc:1306608]
Coordinates
chr16:54851367-54856225:+
Coord C1 exon
chr16:54851367-54851507
Coord A exon
chr16:54853034-54853160
Coord C2 exon
chr16:54855408-54856225
Length
127 bp
Sequences
Splice sites
3' ss Seq
GTGCTATTCTTCCTTCTCAGGTT
3' ss Score
10.47
5' ss Seq
GAAGTAATA
5' ss Score
0.4
Exon sequences
Seq C1 exon
GATTCAAGAAAGAACTTACTCTTTGTGGTCGAACCTGTGGAAGAATCGGGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATACAACTTCACATATAA
Seq A exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGCTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
Seq C2 exon
AGGCTGGAAAAAATTCAGAAAGTCCATTTAAATGGCGCCAAAGTGAAGAGTAAGCAAAGTGAACCCAGCAAACACTCGGGGTTTTCTACCTCAGACAACAGCACAGCCAACACTCCTCAGGATTACAGTGGGAACATGAAGTCCTTCCCATCCAGGAGCCCCTCCCAGGGTGATGAAGATTCTGCTCTGATTCTAACCCAAGACAATTTAAAAAGCTCAGACCCCGATCTTTCAGTGAATAGTGATCAAGAGTCTGGGGTGGAGGATTTGAGCTGTCGGTCTCCCAGTGGTGGTGAGCATGCACCCAGTGAAGACAGCGGCAAGGACCGGGACTCTGATGAAGCTGTGTTTCTCACTGCCTGAAGTTTCCCTTTGGAGTTCCAAAGTAAAAGACAAACACTTTCAAATTAAGGGGAAAGTGCAATTCGTAATAAAAATGTTGAGAAATGGCAAGTTCCATCCAGAACCATGAAATTAGAGCTGCGAAAATGAACAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011420-'28-28,'28-25,29-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.349 C2=0.967
Domain overlap (PFAM):
C1:
PF093326=Mcm10=PU(7.4=20.8)
A:
PF093326=Mcm10=FE(30.9=100)
C2:
PF093326=Mcm10=PD(60.3=67.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTGTGGTCGAACCTGTGGAAG
R:
ATCCTGAGGAGTGTTGGCTGT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]