DreEX6058228 @ danRer10
Exon Skipping
Gene
ENSDARG00000037101 | mtmr7a
Description
myotubularin related protein 7a [Source:ZFIN;Acc:ZDB-GENE-060421-7754]
Coordinates
chr14:30069393-30071827:+
Coord C1 exon
chr14:30069393-30069527
Coord A exon
chr14:30070478-30070604
Coord C2 exon
chr14:30070788-30071827
Length
127 bp
Sequences
Splice sites
3' ss Seq
TGTGTCTTTTCTGAGTTTAGATA
3' ss Score
4.64
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
CATCAAAGAGAAAACTCACTCCATATGGCCTTATTTAATGGAGAACAAGCTGGACTTCATGAACCCTCTGTTCAAACCTGATCAGATCCAGAATCAGGGACTTTTAAGGCCTAGCACTGCCCCCTACTGTTTTAA
Seq A exon
ATACTGGAGGAGGTTGTATAATCGATTTGACCGAGAGTTGCACCCACGTCAGTCTGAGCTGGATTGTCTGATGGCAGTAAAAGACGAAACGCAGCAATTAGAAGAAGAGATGGCTCTCTGTGAGCAG
Seq C2 exon
AAACTGGCTGTTCTAGATAAGGAGCGTGCAAAAATTCTTTACATGCAAAAGGGTGTGTTAGAGAGCAGGCAGGCTCTTTGGTCGGTACCTTTAGATGTAAGTCTGGCCAATACACCTCAGGATTACCTTGGTGGTTTTATAGGTGGTGCTCCCAATGTTTTCACCTCACAGCAAGGAGAGAAAGAAAGCATAGAGTTTAGCCTGTTTGGAGACAAACCAAAAAGTTCAGATGCTGAAAATAGCGACCAGGAATCAGGAGTAGCAGATTTCAGCTGCCATTCTTCTGGCGAAGAGTCTTTGCCAAGTGAGGACAGTGTGAAAGACTCAGACGAGACTGGACACAACAGAGCCTGAACAAATGCAAGTCTGCAAAAAGCAAACACTAATGTGTCTAATGTATGAGCAAAGTGAGGGAGTGGGTATTTTTAAATTATGCAAAGATATTGGACCATCTGGATTATGTGCCTCATGTCATGTGTTTGGCACTACAGAAGCATGTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037101-'13-15,'13-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.453
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGGACTTCATGAACCCTCTG
R:
GGTGAAAACATTGGGAGCACC
Band lengths:
252-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]