BtaEX6106717 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010372 | MTMR7
Description
Bos taurus myotubularin related protein 7 (MTMR7), mRNA. [Source:RefSeq mRNA;Acc:NM_001075641]
Coordinates
chr27:19010141-19014503:+
Coord C1 exon
chr27:19010141-19010281
Coord A exon
chr27:19012393-19012519
Coord C2 exon
chr27:19013467-19014503
Length
127 bp
Sequences
Splice sites
3' ss Seq
AGCTCTGCTGTCCTCTGCAGGTT
3' ss Score
10.98
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
AATTCAAGAAAGAACATACTCTTTATGGGCTCACCTGTGGAAAAATCGGGCCGACTACTTGAATCCTCTGTTTAGAGCTGATCACAGTCAGACCCGGGGAGTCCTTCATCTCCCCACAGCGCCGTGCAACTTCATGTACAA
Seq A exon
GTTTTGGAATGGAATGTATAATCGCTTTGAGAAGGGACTGCAGCCTCGACAATCAGTCACAGATTACCTCATGGCCGTGAAGGAGGAGACTCAGCAGCTGGAGGAAGAACTTGAGGCCCTGGAAGAA
Seq C2 exon
AGGCTGGAAAAAATTCAGAAAGTGCAGTTAAATCGCACTAAGGTGAGGAGTAAGCAGAGTGAGCCCAGCAAACACTCAGGATTTTCTACCTCGGACAACAGCGCAGCCAACACCCCTCAGGATTACAGTGGCAATGTGAAGTCCTTCCCATCCAGGAGCCCTTCCCAGGGCGATGAGGATTCTGCTTTGATCCTCACTCAAGACAATCTGAAAAGTTCAGACCCAGACCTGTCCGCCAACAGTGACCAAGAGTCGGGGGTGGAGGATCTGAGCTGCCGCTCCCCCAGCGGTGGGGAGTGTGTGCCGAGTGAGGACAGTGGCAAGGACCGGGATTCCGACGAAGCCGTGTTTCTCACTGCCTGAGGATCCCCCGCCATGGAGTTCCCAAGTAAAGGACACACAAGGAACACTTTCCAAAAATAAGGGAACAGTGCAATCTCAAATAAAAACAGCCCAAGAAATGGTACGGGTCATCGAGAATTATAGAACGTAGCTACGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010372-'21-19,'21-18,22-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.302 C2=0.942
Domain overlap (PFAM):
C1:
PF093326=Mcm10=PU(7.9=22.9)
A:
PF093326=Mcm10=FE(30.0=100)
C2:
PF093326=Mcm10=PD(60.7=70.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCACCTGTGGAAAAATCGGGC
R:
TGCCACTGTAATCCTGAGGGG
Band lengths:
244-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]