MmuEX6035401 @ mm9
Exon Skipping
Gene
ENSMUSG00000039431 | Mtmr7
Description
myotubularin related protein 7 [Source:MGI Symbol;Acc:MGI:1891693]
Coordinates
chr8:41635513-41641270:-
Coord C1 exon
chr8:41641130-41641270
Coord A exon
chr8:41639625-41639751
Coord C2 exon
chr8:41635513-41637267
Length
127 bp
Sequences
Splice sites
3' ss Seq
TCCTTCCTTCCTTCCTCCAGGTT
3' ss Score
12.62
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
GATTCAAGAAAGAACCTACTCTTTGTGGTCCAACCTGTGGAAGAATCGAGCTGACTACCTCAATCCTCTGTTTAGAGCTGACCACAGTCAGACCCAGGGGAGCCTTCATCTGCCTACAGCTCCATGCAACTTCACCTATAA
Seq A exon
GTTTTGGAATGGGATGTATAACCGCTTTGAAAAGGGGTTGCAGCCTCGACAGTCTGTTACAGATTACCTCATGGCTGTGAAGGAGGAGTCCCAGCAGCTGGAGGAAGAACTGGAGTCCCTAGAAGAA
Seq C2 exon
AGGCTGGAAAAAATTCAGAAAGTCCACTTACATGGTACCAAAGTGAAGAGTAAGCAAAGTGAGCCCAGCAAACACTCGGGGTTCTCTACCTCAGACCACAGCACAGCCAACACCCCTCAGGATTACAGTGGGAACAGCAAGTCCTTCCCATCCAGGAGCCCGTCCCAGGGTGATGAAGATTCTGCTCTGATTCTAACCCAAGACAATTTAAAAAGCTCAGACCCCGACCTCTCAGTGAATAGTGATCAAGAGTCTGGGGTGGAGGATTTGAGCTGTCGATCTCCCAGTGGTGGTGAGCATGCACCCAGCGAAGACAGTGGCAAGGACCGGGACTCGGACGAAGCTGTGTTTCTCACTGCCTAAGTTCCCCTTTGGAGTTCCAAAGTAAAAGACACAGAAACACTTTCAAATTAAGGGGAAAGTGCAATTCGTAGTAAAAATGTTGAGAAATGGCAAGTTCTATCCAGAACCATAAAATTACAGCTGTGAAAATGGGGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039431-'18-16,'18-15,19-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.021 A=0.349 C2=0.983
Domain overlap (PFAM):
C1:
PF061568=DUF972=PU(1.2=2.1),PF093326=Mcm10=PU(8.0=22.9)
A:
PF061568=DUF972=FE(51.9=100),PF093326=Mcm10=FE(30.7=100)
C2:
PF061568=DUF972=PD(44.4=29.8),PF093326=Mcm10=PD(59.9=67.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCATGCAACTTCACCT
R:
AGGTCGGGGTCTGAGCTTTTT
Band lengths:
255-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: