GgaEX0020291 @ galGal4
Exon Skipping
Gene
ENSGALG00000013641 | MTMR7
Description
myotubularin related protein 7 [Source:HGNC Symbol;Acc:HGNC:7454]
Coordinates
chr4:62735118-62738004:+
Coord C1 exon
chr4:62735118-62735258
Coord A exon
chr4:62737111-62737237
Coord C2 exon
chr4:62737645-62738004
Length
127 bp
Sequences
Splice sites
3' ss Seq
GATCTCCCCATCAATTTCAGATT
3' ss Score
8.79
5' ss Seq
GAGGTAATA
5' ss Score
7.96
Exon sequences
Seq C1 exon
AATCCAAGAACGAACATATTCACTGTGGGCTCATCTGTGGAAAAATCGTGCAGATTACCTGAATCCTTTGTACAGACCAGACCACAGGCAAATCTGGGGGACCCTGCACCCACAGATGGCTCCATGCAACTTCTTGTACAA
Seq A exon
ATTCTGGAGTGGTATGTACAACCGCTTTGAAAAAGGGCTGCATCCTCGACAGTCAGTCACTGATTATCTGATGGCAGTGAAGGAGGAGACTCAACAGCTGGAAGAAGAGCTGGCAGTCTTAGGAGAG
Seq C2 exon
AGATTGGCAAATCTTCAAAAATTGCAATTAAATGGTAATAAAGTCAAGAGTAAGCAGCAAGACCGAAGCAAGGAGTTAGCGCTTTCTGCTTCCAGCAACAGCTTAGCTAACACTCCCCAAGAGTACAGCAATGATCTGAAATCATTCCCATCCCGGAGCCCTTCTCAAGGGGATGAAGAAGATTCAGCCTTGATTTTGACACAGGACAACCTGAAAAGCTCTGATCCTGACCTCTCAGCTAACAGTGACCAGGAGTCTGGGGTGGAGGACTTAAGCTGTAGGTCCCCAAGTGCGGGTGGCTGTTTGCCTAGTGAAGACAGTGGCAAGGATTCAGATGAAGCTGTATGCCTGGCAGTTTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013641_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.891
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TTCACTGTGGGCTCATCTGTG
R:
TGGGGAGTGTTAGCTAAGCTGT
Band lengths:
242-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]