HsaEX0043501 @ hg19
Exon Skipping
Gene
ENSG00000107281 | NPDC1
Description
neural proliferation, differentiation and control, 1 [Source:HGNC Symbol;Acc:7899]
Coordinates
chr9:139935514-139940655:-
Coord C1 exon
chr9:139940330-139940655
Coord A exon
chr9:139937379-139937525
Coord C2 exon
chr9:139935514-139935639
Length
147 bp
Sequences
Splice sites
3' ss Seq
GCCTTCTGCTTCCTTCCCAGATG
3' ss Score
11.05
5' ss Seq
CAGGTACGA
5' ss Score
10.03
Exon sequences
Seq C1 exon
GCGCGCCTCGCCGGCGCCTCCATCCCGGATCCTTGCTGCAGCGTCAGCGCCGCCGCCCGTGCCTTTCCTCTTCCTCCTCCTCCTCCTTGGCATCCGCCTCTTCTTCCTCCTGCGTCCTCCCCCGCTGCCTCCGCTGCTCCCGACGCGGAGCCCGGAGCCCGCGCCGAGCCCCTGGCCTCGCGGTGCCATGCTGCCCCGGCGGCGGCGCTGAAGGATGGCGACGCCGCTGCCTCCGCCCTCCCCGCGGCACCTGCGGCTGCTGCGGCTGCTGCTCTCCGGCCTCGTCCTCGGCGCCGCCCTGCGTGGAGCCGCCGCCGGCCACCCGG
Seq A exon
ATGTAGCCGCCTGTCCCGGGAGCCTGGACTGTGCCCTGAAGAGGCGGGCAAGGTGTCCTCCTGGTGCACATGCCTGTGGGCCCTGCCTTCAGCCCTTCCAGGAGGACCAGCAAGGGCTCTGTGTGCCCAGGATGCGCCGGCCTCCAG
Seq C2 exon
GCGGGGGCCGGCCCCAGCCCAGACTGGAAGATGAGATTGACTTCCTGGCCCAGGAGCTTGCCCGGAAGGAGTCTGGACACTCAACTCCGCCCCTACCCAAGGACCGACAGCGGCTCCCGGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107281-'0-4,'0-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.263 A=0.432 C2=1.000
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(11.4=97.4)
A:
PF068096=NPDC1=FE(15.1=100)
C2:
PF068096=NPDC1=FE(13.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCTCCTGCGTCCTCCC
R:
CTCATCTTCCAGTCTGGGCTG
Band lengths:
258-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)