RnoEX0060596 @ rn6
Exon Skipping
Gene
ENSRNOG00000013895 | Npdc1
Description
neural proliferation, differentiation and control, 1 [Source:RGD Symbol;Acc:1303156]
Coordinates
chr3:2625015-2629086:+
Coord C1 exon
chr3:2625015-2625190
Coord A exon
chr3:2627752-2627898
Coord C2 exon
chr3:2628946-2629086
Length
147 bp
Sequences
Splice sites
3' ss Seq
CGCCTCTGCTTCTTCCTCAGATG
3' ss Score
10.08
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CCCGGAGTGGGTACCGAGCCCGGGGCCGTGGGGTGCCATGCTGCCCGGGTGGCGGCGCTGAAGCATGGCGACGCCCGTCCCTCCGCCTTCCCCGCGGCACCTGCGGCTGCTGCGGCTGCTGCTCTCCGGCCTTATTCTGGGAGCGGCCCTGAATGGTGCCACCGCCCGCCGCCCGG
Seq A exon
ATGCTCCCACCTGCCCTGGAAGCCTGGATTGTGCACTGAAGAGGCGGGCAAAGTGCCCACCAGGGGCACATGCCTGCGGACCATGCCTTCAGTCCTTCCAGGAGGACCAGAGAGGGGTCTGTGTGCCGAGGAAGCACCAATCTTCTG
Seq C2 exon
GGGAGGGCCTGCCCCAGCCCAGACTGGAAGAGGAGATCGATTCTCTGGCCCGGGAGCTGGCACTGAAGGAGAAGGAGGCTGGGCACCCAAGGCTCACAGCACAGCCCTTGCCTGAGGCTTCCCAGAAGCTCCTGGAACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013895_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.526 A=0.400 C2=0.896
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(11.2=97.4)
A:
PF068096=NPDC1=FE(14.8=100)
C2:
PF068096=NPDC1=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTGAAGCATGGCGACG
R:
AGGCAAGGGCTGTGCTGT
Band lengths:
234-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]