MmuEX6099499 @ mm9
Exon Skipping
Gene
ENSMUSG00000015094 | Npdc1
Description
neural proliferation, differentiation and control gene 1 [Source:MGI Symbol;Acc:MGI:1099802]
Coordinates
chr2:25258591-25263256:+
Coord C1 exon
chr2:25258591-25258885
Coord A exon
chr2:25261735-25261881
Coord C2 exon
chr2:25263116-25263256
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTGCTTCTTACTCAGATG
3' ss Score
8.14
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CTCTGGCCGCCGCGCCTCCATCCCATCCCGGATCCATTGCCGCAACGTCAGCGCCACCGCCTCCTCTTTTCCTCTTCCTCCTCCGCCCCTCTCGCTTCCCGGCTTCTCCAGTCGCAGTTCCCGGAGTGGGTACCGAGCCCGGGGCCGTGGGGTGCCATGCTGCCCGGGTAGCGGCGCTGAAGCATGGCGACGCCCGTCCCTCCGCCTTCCCCGCGGCACCTGCGGCTGCTACGGCTGCTGCTCTCCGGCCTCATCCTGGGAGCGGCCCTGAATGGTGCCACCGCCCGCCGCCCGG
Seq A exon
ATGCTACCACCTGTCCTGGAAGCCTGGATTGTGCACTGAAGAGGCGGGCAAAATGCCCACCAGGGGCACATGCCTGTGGACCATGCCTTCAGTCCTTCCAGGAAGACCAGCGAGGGTTCTGTGTGCCAAGGAAACACCTATCTTCTG
Seq C2 exon
GGGAGGGCCTGCCCCAGCCCAGACTGGAAGAGGAGATCGATTCTCTGGCCCAGGAACTGGCACTGAAGGAGAAGGAGGCGGGGCACTCAAGGCTGACCGCACAGCCCTTGCTTGAGGCTGCGCAGAAGCTCCTGGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015094-'5-23,'5-15,9-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.097 C2=0.466
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(11.1=97.4)
A:
PF068096=NPDC1=FE(14.4=100)
C2:
PF068096=NPDC1=FE(14.2=100)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCCAGTCGCAGTTCC
R:
TTCCTGGGCCAGAGAATCGAT
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: