MmuEX6099499 @ mm10
Exon Skipping
Gene
ENSMUSG00000015094 | Npdc1
Description
neural proliferation, differentiation and control 1 [Source:MGI Symbol;Acc:MGI:1099802]
Coordinates
chr2:25403071-25407736:+
Coord C1 exon
chr2:25403071-25403365
Coord A exon
chr2:25406215-25406361
Coord C2 exon
chr2:25407596-25407736
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGCCTCTGCTTCTTACTCAGATG
3' ss Score
8.14
5' ss Seq
CTGGTATGG
5' ss Score
7.13
Exon sequences
Seq C1 exon
CTCTGGCCGCCGCGCCTCCATCCCATCCCGGATCCATTGCCGCAACGTCAGCGCCACCGCCTCCTCTTTTCCTCTTCCTCCTCCGCCCCTCTCGCTTCCCGGCTTCTCCAGTCGCAGTTCCCGGAGTGGGTACCGAGCCCGGGGCCGTGGGGTGCCATGCTGCCCGGGTAGCGGCGCTGAAGCATGGCGACGCCCGTCCCTCCGCCTTCCCCGCGGCACCTGCGGCTGCTACGGCTGCTGCTCTCCGGCCTCATCCTGGGAGCGGCCCTGAATGGTGCCACCGCCCGCCGCCCGG
Seq A exon
ATGCTACCACCTGTCCTGGAAGCCTGGATTGTGCACTGAAGAGGCGGGCAAAATGCCCACCAGGGGCACATGCCTGTGGACCATGCCTTCAGTCCTTCCAGGAAGACCAGCGAGGGTTCTGTGTGCCAAGGAAACACCTATCTTCTG
Seq C2 exon
GGGAGGGCCTGCCCCAGCCCAGACTGGAAGAGGAGATCGATTCTCTGGCCCAGGAACTGGCACTGAAGGAGAAGGAGGCGGGGCACTCAAGGCTGACCGCACAGCCCTTGCTTGAGGCTGCGCAGAAGCTCCTGGAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015094-'5-27,'5-18,10-27
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.294 A=0.097 C2=0.492
Domain overlap (PFAM):
C1:
PF068096=NPDC1=PU(11.1=97.4)
A:
PF068096=NPDC1=FE(14.4=100)
C2:
PF068096=NPDC1=FE(14.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTCTCCAGTCGCAGTTCC
R:
TTCCTGGGCCAGAGAATCGAT
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types