HsaEX0044935 @ hg38
Exon Skipping
Gene
ENSG00000006025 | OSBPL7
Description
oxysterol binding protein like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr17:47810594-47813403:-
Coord C1 exon
chr17:47813266-47813403
Coord A exon
chr17:47810772-47810798
Coord C2 exon
chr17:47810594-47810672
Length
27 bp
Sequences
Splice sites
3' ss Seq
TATCTCGGCCTGCCATGCAGAGT
3' ss Score
5.51
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGTACATCGCAGCCTTTGCTGTCTCGGCCTACTCCTCCACATACCACCGAGCCGGCTGCAAGCCCTTCAACCCTGTCCTGGGGGAGACCTACGAGTGTGAGCGGCCTGACCGAGGCTTCCGCTTCATCAGTGAGCAG
Seq A exon
AGTCTGAGAACTTCGCCTTCTGGCAAG
Seq C2 exon
ATATGAAGTGGAAGAACAAGTTCTGGGGCAAATCCCTGGAGATTGTGCCTGTGGGAACAGTCAACGTCAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000006025-'28-29,'28-28,29-29
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
PF0123713=Oxysterol_BP=FE(6.0=100)
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCTACGAGTGTGAGCGG
R:
GTTCCCACAGGCACAATCTCC
Band lengths:
112-139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development