BtaEX6088112 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013523 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr19:39260966-39262085:+
Coord C1 exon
chr19:39260966-39261103
Coord A exon
chr19:39261843-39261906
Coord C2 exon
chr19:39262007-39262085
Length
64 bp
Sequences
Splice sites
3' ss Seq
TAACTTCTTTGCTCCTTAAGGTC
3' ss Score
8.12
5' ss Seq
AAGGTGAAA
5' ss Score
4.51
Exon sequences
Seq C1 exon
GTGTACATTGCAGCCTTCGCGGTGTCTGCCTACTCCTCCACATACCACCGGGCGGGCTGCAAGCCCTTCAACCCTGTCCTGGGGGAGACCTATGAGTGTGAGCGCCCTGACCGAGGCTTCCGCTTCATCAGTGAGCAG
Seq A exon
GTCTCCCATCACCCCCCCATCTCAGCGTGCCATGCAGAATCTGAGAACTTCATCTTCTGGCAAG
Seq C2 exon
ACATGAAGTGGAAGAACAAGTTCTGGGGCAAATCCCTGGAGATTGTGCCTGTTGGGACAGTCAACGTGAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013523-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
PF0123713=Oxysterol_BP=FE(6.0=100)
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGTCTGCCTACTCCTCCACA
R:
GCCCCAGAACTTGTTCTTCCA
Band lengths:
146-210
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]