MmuEX6089165 @ mm10
Exon Skipping
Gene
ENSMUSG00000038534 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:MGI Symbol;Acc:MGI:1918490]
Coordinates
chr11:97060451-97065859:+
Coord C1 exon
chr11:97060451-97060588
Coord A exon
chr11:97065589-97065652
Coord C2 exon
chr11:97065781-97065859
Length
64 bp
Sequences
Splice sites
3' ss Seq
AGACGTCTTTGCCCATCAAGGTC
3' ss Score
5.25
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTGTACATCGCAGCCTTTGCTGTCTCTGCCTACTCCTCCACGTACCACCGGGCGGGATGCAAGCCCTTCAACCCGGTCCTGGGAGAGACCTACGAGTGTGAGCGGCCTGACCGGGGTTTCCGTTTTATCAGCGAGCAG
Seq A exon
GTCTCCCACCATCCTCCGATCTCCGCGTGTCACGCAGAATCTGAGAACTTCATCTTCTGGCAAG
Seq C2 exon
ACATGAAATGGAAGAACAAGTTCTGGGGCAAATCCCTGGAGATCGTGCCTGTGGGGACAGTCAATGTCAGTCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038534-'25-34,'25-25,34-34=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
PF0123713=Oxysterol_BP=FE(6.0=100)
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGGAGAGACCTACGAGTG
R:
GGGCAGACTGACATTGACTGT
Band lengths:
138-202
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types