DreEX0052795 @ danRer10
Exon Skipping
Gene
ENSDARG00000012981 | osbpl7
Description
oxysterol binding protein-like 7 [Source:ZFIN;Acc:ZDB-GENE-041010-212]
Coordinates
chr12:28663184-28663643:-
Coord C1 exon
chr12:28663506-28663643
Coord A exon
chr12:28663357-28663420
Coord C2 exon
chr12:28663184-28663262
Length
64 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTGTTTTCCCTCAGGTT
3' ss Score
12.01
5' ss Seq
AGGGTATGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTTTATATTGCTGCTTTTGCTATATCTGGCTATGCCACGGCTCAGTTCCGCAACCGTTACAAACCATTTAACCCAGTGCTGGGAGAGACTTTTGAGTGTATCAGAGAAGACAGAGGATTCTGGTATATTAGCGAACAG
Seq A exon
GTTTCCCATCACCCACCTATATCTGCATGCCATGCAGACTCTGACAATTTCAGCTTCTGGCAGG
Seq C2 exon
ACCAGAGATGGAAGAACAAATTTTGGGGCAAATCTTTGGAGATCATGCCAACCGGGATGGTGAACGTGACTCTAAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012981-'24-20,'24-19,25-20
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.8=100)
A:
PF0123713=Oxysterol_BP=FE(6.0=100)
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCCGCAACCGTTACAAACCA
R:
CCGGTTGGCATGATCTCCAAA
Band lengths:
148-212
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]