GgaEX1041433 @ galGal4
Exon Skipping
Gene
ENSGALG00000028934 | OSBPL7
Description
oxysterol binding protein-like 7 [Source:HGNC Symbol;Acc:HGNC:16387]
Coordinates
chr27:3906636-3907066:+
Coord C1 exon
chr27:3906636-3906773
Coord A exon
chr27:3906850-3906913
Coord C2 exon
chr27:3906988-3907066
Length
64 bp
Sequences
Splice sites
3' ss Seq
CCTCCCTTGTCCTCCCCCAGGTC
3' ss Score
12.23
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
Exon sequences
Seq C1 exon
GTCTATGTGGCTGCCTTCGCTGTGTCCGCCTACGCCTCCACCTTCTACCGTGCGGGCAGCAAACCCTTCAACCCAGTGCTGGGTGAGACCTACGAGTGCGTGCGGCCCGACCGAGGCTTCCGCTTCATCAGCGAGCAG
Seq A exon
GTCAGCCATCACCCCCCCATCTCCGCTTGCCACGCCGAGTCCGACAACTTCGTCTTCTGGCAAG
Seq C2 exon
ACATGAGGTGGAAGAACAAATTCTGGGGCAAATCCTTGGAGATCGTCCCGGTGGGCACCGTCAACGTCCGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028934_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(22.6=100)
A:
PF0123713=Oxysterol_BP=FE(10.6=100)
C2:
PF0123713=Oxysterol_BP=FE(13.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACGCCTCCACCTTCTACC
R:
TGCCCCAGAATTTGTTCTTCCA
Band lengths:
140-204
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]