RnoEX0062538 @ rn6
Exon Skipping
Gene
ENSRNOG00000009473 | Osbpl7
Description
oxysterol binding protein-like 7 [Source:RGD Symbol;Acc:1309141]
Coordinates
chr10:84994763-85000937:+
Coord C1 exon
chr10:84994763-84994900
Coord A exon
chr10:85000671-85000734
Coord C2 exon
chr10:85000859-85000937
Length
64 bp
Sequences
Splice sites
3' ss Seq
GGACGTCTTTGCTCATTAAGGTC
3' ss Score
5.78
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
GTATACATCGCAGCCTTTGCTGTCTCTGCCTACTCCTCCACGTACCACCGGGCGGGATGCAAGCCCTTCAACCCGGTCCTGGGAGAGACCTACGAGTGTGAGCGGCCTGACCGGGGTTTCCGTTTTATCAGCGAGCAG
Seq A exon
GTCTCCCATCATCCCCCGATCTCCGCGTGTCATGCAGAATCTGAGAACTTCATCTTCTGGCAAG
Seq C2 exon
ACATGAAATGGAAGAACAAGTTCTGGGGCAAATCCCTGGAGATCGTGCCCGTGGGGACAGTCAATGTCAGCCTGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009473-'20-26,'20-24,23-26
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0123713=Oxysterol_BP=FE(12.9=100)
A:
PF0123713=Oxysterol_BP=FE(6.0=100)
C2:
PF0123713=Oxysterol_BP=FE(7.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTACTCCTCCACGTACCACC
R:
GCCCCAGAACTTGTTCTTCCA
Band lengths:
139-203
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]