HsaEX0045149 @ hg19
Exon Skipping
Gene
ENSG00000101104 | PABPC1L
Description
poly(A) binding protein, cytoplasmic 1-like [Source:HGNC Symbol;Acc:15797]
Coordinates
chr20:43545397-43550372:+
Coord C1 exon
chr20:43545397-43545512
Coord A exon
chr20:43547547-43547686
Coord C2 exon
chr20:43550235-43550372
Length
140 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTGTCATGTCCACAGCTT
3' ss Score
7.89
5' ss Seq
TTGGTGGGT
5' ss Score
4.3
Exon sequences
Seq C1 exon
GTGGCGTGTGACGAGCATGGCTCCCGGGGTTTCGGCTTTGTCCATTTTGAGACCCATGAGGCCGCACAGCAGGCCATCAACACCATGAATGGGATGCTGCTGAATGACCGCAAAGT
Seq A exon
CTTTGTGGGTCACTTCAAGTCTCGACGGGAGCGGGAGGCGGAGCTGGGGGCGCGGGCCCTGGAGTTCACCAACATCTACGTGAAGAACCTCCCGGTGGATGTGGACGAGCAAGGCCTGCAGGACCTCTTCTCCCAGTTTG
Seq C2 exon
GCCGTGGTCCATATGAACGGGAAGGAGGTGAGCGGGCGGCTGCTGTACGCGGGCCGGGCCCAAAAGCGCGTGGAGCGGCAGAATGAACTGAAGCGCAGGTTTGAGCAGATGAAGCAGGACCGGCTGAGGCGTTACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000101104_MULTIEX1-2/5=1-4
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.027 A=0.000 C2=0.139
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.1=100)
A:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
C2:
PF0007617=RRM_1=PD(21.4=32.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCGTGTGACGAGCATG
R:
CAGCCGGTCCTGCTTCATC
Band lengths:
242-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)