MmuEX6106808 @ mm10
Exon Skipping
Gene
ENSMUSG00000054582 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:MGI Symbol;Acc:MGI:1922908]
Coordinates
chr2:164031199-164032582:+
Coord C1 exon
chr2:164031199-164031314
Coord A exon
chr2:164032180-164032319
Coord C2 exon
chr2:164032488-164032582
Length
140 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTGATGTGTCCACAGCTT
3' ss Score
7.62
5' ss Seq
TTGGTGGGC
5' ss Score
3.03
Exon sequences
Seq C1 exon
GTAGTATACAATGAACATGGATCGCGGGGTTTCGGCTTTGTGCATTTCGAGACCCACGAGGCTGCCCAGAAGGCCATCAACACCATGAATGGGATGTTGCTGAACGACCGGAAAGT
Seq A exon
CTTTGTAGGCCATTTCAAGTCTCGACAGAAGCGGGAGGCAGAGCTGGGGGCTCGGGCCCTCGGGTTCACCAACATCTATGTGAAGAACCTGCACGCGAACGTGGACGAGCAGAGGCTCCAGGACCTCTTCTCCCAGTTTG
Seq C2 exon
GAAATATGCAGAGTGTGAAGGTGATGAGAGACAGCAATGGGCAATCCCGGGGCTTCGGCTTTGTCAACTTTGAGAAGCATGAGGAAGCCCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054582-'4-6,'4-4,6-6=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.062
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=FE(55.1=100)
A:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
C2:
PF0007617=RRM_1=FE(44.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TAGTATACAATGAACATGGATCGCGG
R:
CTTCTGGGCTTCCTCATGCTT
Band lengths:
210-350
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types