HsaEX0049968 @ hg19
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR domain containing 7 [Source:HGNC Symbol;Acc:9351]
Coordinates
chr16:90141324-90142338:-
Coord C1 exon
chr16:90142250-90142338
Coord A exon
chr16:90141759-90141882
Coord C2 exon
chr16:90141324-90141431
Length
124 bp
Sequences
Splice sites
3' ss Seq
GAATCTGTTACTTCCTCTAGGTC
3' ss Score
8.95
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
TTCTAGACAGTCCCAGCACCATGAGCCCTGAAAGGTCCCAAGAGGAGAGCCCAGAAGGAGACACAGAGAGAACAGAGCGGAAGCCCATG
Seq A exon
GTCAAAGATGCCTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGGCAGAAATGGGAGACTGGGAGAAAACTCGCTATAGGAATGTGAAAATGAACTATAATGCACTGATTACTGTAG
Seq C2 exon
GTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCCGATGAAGAATGGACACCTAGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.000 C2=0.568
Domain overlap (PFAM):
C1:
NO
A:
PF0135222=KRAB=WD(100=92.9),PF0230512=Phage_F=PU(39.4=88.1)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0230512=Phage_F=FE(38.3=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGACAGTCCCAGCACCA
R:
TGCTGCCTAGGTGTCCATTCT
Band lengths:
195-319
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)