HsaEX0049968 @ hg38
Exon Skipping
Gene
ENSG00000126856 | PRDM7
Description
PR/SET domain 7 [Source:HGNC Symbol;Acc:HGNC:9351]
Coordinates
chr16:90074916-90092072:-
Coord C1 exon
chr16:90091607-90092072
Coord A exon
chr16:90075351-90075474
Coord C2 exon
chr16:90074916-90075023
Length
124 bp
Sequences
Splice sites
3' ss Seq
GAATCTGTTACTTCCTCTAGGTC
3' ss Score
8.95
5' ss Seq
TAGGTAACA
5' ss Score
6.25
Exon sequences
Seq C1 exon
GATCTTGACTCACTGCAACCTCTGATTCCCGGGTTCAAGCGATTCTCCTGTCTCAGCCTCCCGAGTAGCTGGGATTACAGGCGCCCACCACCATGCCTGTCTAATTTTTGTACTTTTAGTATAGACAGAGTTTCACCATGTTGGCCAGGCTGGCCTCGATCTCCTCACCTCAGGTCATCCACTGCCTTGGACTCCCAAAGTGCTGGGATTACAGCTGATGGTTTTATAAAGGGGAGTTTCCCTACACAAGCTCTTTTGCCTGCTGCCATGTAAGAGATGTGACTTTGTTCCTCACCTGCCTTCTGCCATGAGTGTGAGGCCTCTCCGACCATGTGCAACTGTGAGTCAATTAAACCTCTTTTTTTATAAATTACCCAGCCTCAGATATGTCTTTATTAGCAGCGTGAGAACAGACTAATACAACCTGTATGCCAGAAAGGCTGGGAGCACCTGTGGACTCTGACAG
Seq A exon
GTCAAAGATGCCTTCAAAGACATTTCCATATACTTCACCAAGGAAGAATGGGCAGAAATGGGAGACTGGGAGAAAACTCGCTATAGGAATGTGAAAATGAACTATAATGCACTGATTACTGTAG
Seq C2 exon
GTCTCAGAGCCACTCGACCAGCTTTCATGTGTCACCGAAGGCAGGCCATCAAACTCCAGGTGGATGACACAGAAGATTCCGATGAAGAATGGACACCTAGGCAGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000126856_MULTIEX2-2/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.687
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=WD(100=92.9),PF0230512=Phage_F=PU(41.6=88.1)
C2:
PF0135222=KRAB=PD(0.1=0.0),PF0230512=Phage_F=FE(40.4=100)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCCTGCTGCCATGTAAGAG
R:
TCGGTGACACATGAAAGCTGG
Band lengths:
249-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development