HsaEX0050461 @ hg19
Exon Skipping
Gene
ENSG00000204314 | PRRT1
Description
proline-rich transmembrane protein 1 [Source:HGNC Symbol;Acc:13943]
Coordinates
chr6:32116136-32119700:-
Coord C1 exon
chr6:32118145-32119700
Coord A exon
chr6:32117314-32117499
Coord C2 exon
chr6:32116136-32117175
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCAAATTTCCTTCCACAGCCA
3' ss Score
8.24
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
ACAATGCCCCTCAGCCTCCAGCCGAACCCCCAGCCCCACCGCCACAGGCAGCCCCTTCCTCACACCATCACCACCACCACCACTACCATCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGGGCAGGGGGCCTGGCCTCTTCCGCGGCCACCGCTCAGCGCGGTCCCTCCTCCTCTGCCACGCTGCCGAGGCCCCCCCACCACGCCCCTCCCGGCCCTGCTGCCGGGGCACCCCCACCCGGCTGCGCTACCTTGCCCCGCATGCCACCCGACCCTTACCTGCAGGAGACTCGCTTCGAGGGCCCACTTCCCCCGCCGCCGCCCGCTGCCGCCGCCCCGCCCCCGCCGGCGCCAGCCCAGACTGCCCAGGCCCCTGGCTTCGTGGTGCCCACGCACGCGGGGACTGTGGGCACGCTGCCGCTGGGGGGCTACGTAGCGCCCGGATACCCCCTGCAGCTGCAGCCTTGCACTGCTTACGTGCCGGTCTACCCGGTGGGCACG
Seq A exon
CCATATGCAGGCGGGACCCCGGGGGGAACAGGAGTGACCTCCACTCTCCCCCCGCCGCCCCAGGGCCCAGGGCTGGCCCTACTGGAGCCGAGGCGCCCGCCACACGACTACATGCCCATCGCGGTGCTGACCACCATCTGTTGCTTCTGGCCTACTGGCATCATTGCCATCTTCAAGGCCGTGCAG
Seq C2 exon
GTGCGCACGGCCTTGGCCCGCGGAGACATGGTGTCGGCCGAGATCGCTTCACGCGAGGCCCGGAACTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCGGCCATGGTGCTCTGTACCATCCTCACCGTAGTCATCATCATCGCCGCGCAGCACCACGAGAACTACTGGGATCCCTAAAAACGCCCCTGGTCCGGCCCCACTCTGCGCCCCTCGATCTCCCAGGCTCTTTCTGCAGTCATACCGCGGACCCAATGGGCGCCCTGCACACCCGTTTCTGGGGCCGTCAGACTTGGATACATCGTAAACTCCGCCTCCACGGAACGTCTCGCCTTGCGAGCAAGCTCGGAATCCAGTTCCTCAGGAACCCCTCCAAAACCCACACCCCCAGGGACGCCGCTTTCCGGGATCCCGGCCAAACGCCGGACCCTCAGTCGCTCCAGGCCCCCTCACCCTCAAAGTGTAGCGCCCCCAACCGAGCAACCTCGGTTTGGTCCCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314-'13-17,'13-16,14-17
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=0.466 C2=0.262
Domain overlap (PFAM):
C1:
NO
A:
PF045057=Dispanin=PU(54.4=79.0),PF0489312=Yip1=PU(46.0=74.2)
C2:
PF045057=Dispanin=PD(43.3=66.1),PF0489312=Yip1=PD(52.0=88.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTAGCGCCCGGATACC
R:
GGGCGTTTTTAGGGATCCCAG
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)