MmuEX0037427 @ mm9
Exon Skipping
Gene
ENSMUSG00000015476 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:MGI Symbol;Acc:MGI:1932118]
Coordinates
chr17:34767578-34770071:+
Coord C1 exon
chr17:34767578-34768116
Coord A exon
chr17:34768715-34768900
Coord C2 exon
chr17:34769029-34770071
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGTCCTTGCCACAGCCC
3' ss Score
7.63
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
ACAATGCCCCCCAGCCACCGGCCGAGCCCCCCATCCCGCCCCCACAAACGGCCCCATCCTCACATCACCACCACCACCACCATTACCACCAGTCTGGCACCGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGGCCTCTGCTGCGGCCAGTGCTCAACGCGGTCCTTCGTCTTCCGCCACGCTACCGCGGCCCCCCCACCATGCCCCGCCCGGCCCCGCCGCTGGGGCTCCCCCACCCGGCTGTGCTACCTTACCCCGCATGCCACCCGACCCTTATCTGCAGGAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCGCCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCGGGCTTCGTGGTTCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCGCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACTGCTTATGTCCCTGTGTATCCGGTGGGCACG
Seq A exon
CCCTACGCAGGCGGGACCCCCGGGGGTCCTGGAGTGACCTCCACTCTGCCCCCGCCGCCCCAGGGCCCAGGATTGGCTCTGTTGGAGCCCAGGCGTCCGCCACACGACTACATGCCCATCGCTGTGCTGACCACCATCTGCTGCTTCTGGCCCACAGGCATCATCGCCATCTTCAAGGCCGTGCAG
Seq C2 exon
GTGCGCACGGCTTTGGCCCGCGGAGATTTGGTGTCTGCCGAGATCGCTTCACGCGAAGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCCATGGTGCTTTGTACCATCCTCACTGTAGTCATCATCATCGCCGCCCAGCACCACGAAAACTACTGGGATCCCTAAAAACGTCCCCATCTCGGCCCCACTCCGTGCCCCCCAACCTCCCAGGCGCGTCGCGCAGTTCTGCCGCCTACCCAACGCGCGCCCTGCACAGCCTCCTGAGGCGCCGCTGGACGTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGAGTACGCTCAGTTCCTCAGGAACCCCTCTAACACCCACATCCTCAGCGGCACTGGAATCCGCGCCAAACCCCAATCCTCCAGTCGCCCTAGTTTCCCACCCCATCAAAGTGCAGTGCCAGGGGAGGAGCTCTCCTCGTCTCCTCTCCCCAGTAGGAGTCAGGTCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015476-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.403 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF045057=Dispanin=PU(54.4=79.0)
C2:
PF045057=Dispanin=PD(43.3=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCTTCGAGGGTCCACTTC
R:
CTCGGCAGACACCAAATCTCC
Band lengths:
253-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: