DreEX0058734 @ danRer10
Exon Skipping
Gene
ENSDARG00000062208 | prrt1
Description
proline-rich transmembrane protein 1 [Source:ZFIN;Acc:ZDB-GENE-060503-686]
Coordinates
chr19:27273618-27279432:-
Coord C1 exon
chr19:27279074-27279432
Coord A exon
chr19:27276402-27276593
Coord C2 exon
chr19:27273618-27273992
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTGTTTGTGTCTGTTCTCAGGCG
3' ss Score
10.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GACTGGAGGAAGCAGCAGGGCGACAGCCTATGTCTCAGCCCATGATGCAGATGGCTCCACCTCCATACCTGCCCACCCAGGACCCCAACATGCCCCCACATCCCCCTCCACCCGGCTGTGCCCCGCAGCCTAACTACCCTCCTCCGCCTCCTCCACCGGGGTCTGATGGATATCTGCAGGAAACACAATTCCACTCTGGGACGCTTGGACCCCAGGGAGCTCCGAATGGATACCCAGTGCAAACACATGGACCAGTGGGCACCGTCCCGCATCCTCCTGTGGGCTATTTACATCCAGGATACCCCCTACAACTGCAGCCCTGCACAGCCTATGTGCCCGTTTATCCTATAGGCACAGGG
Seq A exon
GCGCAGCCTTACATGCCAAATGGTGCGCCTCATCCAGGTGTTGCCCCAGGCCAGATGGCCATGCATATGCCAAACGGCATTGCTCTGATGGAGTCCCGTCGTCCTCCTCATGATTACCTGCCCATCGCCGTCCTAACCACCGTCTGCTGCTTTTGGCCCACAGGAATAATCGCCATCATCAAAGCTGTGCAG
Seq C2 exon
GTTCGTACCGCCATTGCTCGAGGTGACATGGTTACAGCGGAGATTGCCTCACGTGAAGCACGTAACTTCTCCTTCATCAGTCTGGCTGTGGGAATCGCCTCTATTGTGCTCTGCACCATTCTCACCGTGGTGGTCATCATCGCCTCTCAGCACCATGACGACGACTGGGAGCCCTAGAGAGCCTCCCTTTCCTGCCCTCCAGACCCCGGGCCACCATTCCAGTCGGTATTCTGCTTTTTCTGTCACACAGCACAGTTCAGACGGCTCCAGCCACCACATCCTTATCTGCAGTTGAAAACACGCTTCAACAGCCATTTGCCAATGTATTAGTTTGAAGATAGATTGATGGTGTGGTAAACCCAAGGGTGGGAAACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062208-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.770 A=0.219 C2=0.034
Domain overlap (PFAM):
C1:
NO
A:
PF045057=Dispanin=PU(50.0=64.1)
C2:
PF045057=Dispanin=PD(47.6=66.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACCGGGGTCTGATGGATAT
R:
CCGCTGTAACCATGTCACCTC
Band lengths:
247-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]