RnoEX0070310 @ rn6
Exon Skipping
Gene
ENSRNOG00000000433 | Prrt1
Description
proline-rich transmembrane protein 1 [Source:RGD Symbol;Acc:1359348]
Coordinates
chr20:4393727-4396243:+
Coord C1 exon
chr20:4393727-4394265
Coord A exon
chr20:4394861-4395046
Coord C2 exon
chr20:4395188-4396243
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCACTGTCCTTCCCACAGCCC
3' ss Score
10.48
5' ss Seq
CAGGTGTGG
5' ss Score
6.34
Exon sequences
Seq C1 exon
ACAATGCCCCCCAACCTCCAGCCGAGCCCCCCATCCCTCCCCCACAAACCGCTCCATCCTCTCATCATCATCACCACCACCACTACCACCAGTCTGGCACTGCCACCCTCCCGCGCTTAGGAGCAGGTGGCCTGGCCTCTGCTGCGGCTGGCGCTCAACGTGGTCCTTCGTCCTCTGCCACGCTACCGCGGCCCCCCCACCATGCCCCTCCCGGTCCCGCTGCTGGGGCTCCCCCACCCGGCTGTGCTACCCTACCCCGCATGCCACCCGACCCTTATCTGCAGGAGACTCGCTTCGAGGGTCCACTTCCCCCACCACCGCCTGCGGCCGCCGCCCCACCCCCACCAGCGCCTGCCCCGACGGCCCAAGCCCCAGGCTTCGTGGTGCCCACGCACGCGGGGGCGGTGGGCACGTTGCCGCTGGGGGGCTACGTGGCTCCGGGCTACCCGCTGCAGCTGCAGCCGTGCACCGCTTATGTCCCGGTGTATCCGGTGGGCACG
Seq A exon
CCCTACGCAAGCGGGACCCCCGGGGGTCCAGGAGTGACCTCCACTCTGCCCCCGCCGCCCCAGGGCCCAGGGTTGGCTCTGTTGGAGCCCAGGCGCCCGCCGCATGACTACATGCCCATCGCTGTGCTGACCACCATCTGCTGCTTCTGGCCCACAGGCATCATCGCCATCTTCAAGGCCGTGCAG
Seq C2 exon
GTGCGCACGGCCTTGGCCCGCGGAGACTTGGTGTCCGCCGAGATCGCTTCGCGCGAGGCCCGGAATTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCAGCTATGGTGCTTTGTACCATCCTCACTGTAGTCATCATCATTGCCGCCCAGCACCACGAAAACTACTGGGATCCCTAAAAACGTCCCCGTCTCGGCCCCGCTCCGTGCCCCCTCCCAACCTCCCAGGCGCGTGGCGCAGTCCTGCCGCCTACCCAGAGCGCGCCCTGCACATCCTCCTGAGGCGCCGCTGGACTTCCAGACATCATAAACTCCGCCCCCACGGAACCTCTGGCCCAGAGAGTACGCTCAGTTCCTCAGGAACCCCTCTAGCACCCACATCCTCAGCGGCACTGGAATCCGCGCCAAACCCCGACCCTCCAGTCGCCCCAATTCCCCACCCCATCAAAGTGCAGTGCCAGCCAGGGGCGGATCTCTCCTGCTCTCCGCTCCCCAGTAGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000433-'3-10,'3-8,4-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.403 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF045057=Dispanin=PU(54.4=79.0)
C2:
PF045057=Dispanin=PD(43.3=66.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCTTATGTCCCGGTGTAT
R:
CTGGGAGGTTGGGAGGGG
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]