HsaEX0050461 @ hg38
Exon Skipping
Gene
ENSG00000204314 | PRRT1
Description
proline rich transmembrane protein 1 [Source:HGNC Symbol;Acc:HGNC:13943]
Coordinates
chr6:32148359-32150583:-
Coord C1 exon
chr6:32150368-32150583
Coord A exon
chr6:32149537-32149722
Coord C2 exon
chr6:32148359-32149398
Length
186 bp
Sequences
Splice sites
3' ss Seq
CCCCAAATTTCCTTCCACAGCCA
3' ss Score
8.24
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GAGACTCGCTTCGAGGGCCCACTTCCCCCGCCGCCGCCCGCTGCCGCCGCCCCGCCCCCGCCGGCGCCAGCCCAGACTGCCCAGGCCCCTGGCTTCGTGGTGCCCACGCACGCGGGGACTGTGGGCACGCTGCCGCTGGGGGGCTACGTAGCGCCCGGATACCCCCTGCAGCTGCAGCCTTGCACTGCTTACGTGCCGGTCTACCCGGTGGGCACG
Seq A exon
CCATATGCAGGCGGGACCCCGGGGGGAACAGGAGTGACCTCCACTCTCCCCCCGCCGCCCCAGGGCCCAGGGCTGGCCCTACTGGAGCCGAGGCGCCCGCCACACGACTACATGCCCATCGCGGTGCTGACCACCATCTGTTGCTTCTGGCCTACTGGCATCATTGCCATCTTCAAGGCCGTGCAG
Seq C2 exon
GTGCGCACGGCCTTGGCCCGCGGAGACATGGTGTCGGCCGAGATCGCTTCACGCGAGGCCCGGAACTTCTCCTTCATCTCCCTGGCCGTGGGCATCGCGGCCATGGTGCTCTGTACCATCCTCACCGTAGTCATCATCATCGCCGCGCAGCACCACGAGAACTACTGGGATCCCTAAAAACGCCCCTGGTCCGGCCCCACTCTGCGCCCCTCGATCTCCCAGGCTCTTTCTGCAGTCATACCGCGGACCCAATGGGCGCCCTGCACACCCGTTTCTGGGGCCGTCAGACTTGGATACATCGTAAACTCCGCCTCCACGGAACGTCTCGCCTTGCGAGCAAGCTCGGAATCCAGTTCCTCAGGAACCCCTCCAAAACCCACACCCCCAGGGACGCCGCTTTCCGGGATCCCGGCCAAACGCCGGACCCTCAGTCGCTCCAGGCCCCCTCACCCTCAAAGTGTAGCGCCCCCAACCGAGCAACCTCGGTTTGGTCCCTAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000204314_MULTIEX1-3/3=2-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.680 A=0.403 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF045057=Dispanin=PU(54.4=79.0)
C2:
PF045057=Dispanin=PD(43.3=66.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACGTAGCGCCCGGATACC
R:
GGGCGTTTTTAGGGATCCCAG
Band lengths:
258-444
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development