HsaEX0052796 @ hg19
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:13427]
Coordinates
chr3:29977577-30029714:+
Coord C1 exon
chr3:29977577-29977687
Coord A exon
chr3:29985698-29985745
Coord C2 exon
chr3:30029634-30029714
Length
48 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTTTTCATTCAAAGATT
3' ss Score
8.31
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGCTGTGATTACACCAACCATGGACCATCCCATGTCAATGCAGCCAGCCAACATGATGGGCCCACTGACACAGCAGATGAATCACCTTTCGTTGGGCACAACAGGAACG
Seq A exon
ATTCAATCCCAAGACAGGATTATGATACTCCACCAGCTGTTGTGTCAG
Seq C2 exon
TATATGACTGCTGCTGCTCCTATGCAAGGGACCTACATTCCTCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX2-4/5=3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.848 A=0.000 C2=0.287
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCATGTCAATGCAGCCAG
R:
CAGGCGTGTACTGAGGAATGT
Band lengths:
138-186
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)