MmuEX0039211 @ mm10
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116586018-116636479:-
Coord C1 exon
chr9:116636369-116636479
Coord A exon
chr9:116627890-116627937
Coord C2 exon
chr9:116586018-116586095
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTTTTCATTCCAAGATT
3' ss Score
6.86
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGCTGTGATCACACCCGCCGTGGACCACCCCATGTCAATGCAGCCAACTAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACAGCAGGAACG
Seq A exon
ATTCAATCCCAAGACAGAATTATGGTACTTCACCAGCTGTTATGTCAG
Seq C2 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX1-3/5=2-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=0.000 C2=0.169
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCACCCCATGTCAATG
R:
AGGCGTGTACTGGGGAATGTA
Band lengths:
141-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types