BtaEX0029987 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4623602-4667565:+
Coord C1 exon
chr22:4623602-4623712
Coord A exon
chr22:4631056-4631103
Coord C2 exon
chr22:4667485-4667565
Length
48 bp
Sequences
Splice sites
3' ss Seq
CATGCTCTTTTCATTCAAAGATT
3' ss Score
8.31
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGCTGTGATTACGCCAGCGATGGACCATCCCATGTCAATGCAGCCAGCAAGCATGATGGGCCCCCTGACACAGCAGATGAACCACCTTTCGCTGGGCACCACGGGAACG
Seq A exon
ATTCAGTCCCAAGACAGGATTATGATACTCCACCAGCTGTTGTGTCAG
Seq C2 exon
TACATGACTGCCGCGGCTCCTATGCAAGGGACCTACATCCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCCATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.000 C2=0.185
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCATGTCAATGCAGCCAG
R:
CGTGTACTGGGGGATGTAGGT
Band lengths:
134-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development