BtaEX0029988 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000044062 | RBMS3
Description
RNA binding motif, single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr22:4623602-4670463:+
Coord C1 exon
chr22:4623602-4623712
Coord A exon
chr22:4667485-4667565
Coord C2 exon
chr22:4670336-4670463
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTCTCTTTGATTTCCTCCAGTAC
3' ss Score
8.8
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCTGTGATTACGCCAGCGATGGACCATCCCATGTCAATGCAGCCAGCAAGCATGATGGGCCCCCTGACACAGCAGATGAACCACCTTTCGCTGGGCACCACGGGAACG
Seq A exon
TACATGACTGCCGCGGCTCCTATGCAAGGGACCTACATCCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCCATTGAA
Seq C2 exon
GGTGTTGTGGCTGATACCTCTCCCCAGACAGTGGCACCTTCGTCCCAGGACACGAGTGGTCAGCAGCAGCAGATAGCAGTGGACACAGCCAGCGAGCATGCATCTGCGTATTCCTACCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000044062_MULTIEX1-2/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.811 A=0.185 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCATGTCAATGCAGCCAG
R:
GTCCACTGCTATCTGCTGCTG
Band lengths:
167-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development