MmuEX0039212 @ mm9
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116491856-116545597:-
Coord C1 exon
chr9:116545487-116545597
Coord A exon
chr9:116495136-116495213
Coord C2 exon
chr9:116491856-116491983
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGATTTTCTCTAGTAT
3' ss Score
8.82
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCTGTGATCACACCCGCCGTGGACCACCCCATGTCAATGCAGCCAACTAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACAGCAGGAACG
Seq A exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq C2 exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX1-6/7=4-7
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.154 C2=0.998
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACATCGTGGGTCCCCTGA
R:
GTTGGAAGGAGTATGCCGGTG
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: