RnoEX0074769 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124840160-124892718:-
Coord C1 exon
chr8:124892608-124892718
Coord A exon
chr8:124844235-124844312
Coord C2 exon
chr8:124840160-124840288
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGATTTTCTCTAGTAT
3' ss Score
8.82
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCTGTGATCACACCCACCATGGACCACCCCATGTCAATGCAGCCAACCAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACGGCAGGAACG
Seq A exon
TATATGACCGCTGCTCCCATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq C2 exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCGCCGGCATATTCATTCCAACAGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881-'38-35,'38-33,41-35
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.749 A=0.168 C2=0.984
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCAGCCAACCAACATCG
R:
GTTCACTGGGTGTGTCCACTG
Band lengths:
171-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]