GgaEX6019434 @ galGal4
Exon Skipping
Description
NA
Coordinates
chr2:40164122-40179470:+
Coord C1 exon
chr2:40164122-40164139
Coord A exon
chr2:40176792-40176872
Coord C2 exon
chr2:40179343-40179470
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTGTCTTTGATTTGTTCTAGTAC
3' ss Score
8.2
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
CATTGCGTCCTGATGCAA
Seq A exon
TACATGACTGCTGCTGCACCTATGCAAGGGACCTACATTCCCCAGTACACTCCTGTGCCTCCAACAGCTGTCCCTATTGAA
Seq C2 exon
GGTGTTGTTGCTGATACTTCTCCACAGACAGTAGCATCTTCATCACAGGAAGCCAGTGGTCAACAGCAACAGATGACAGTGGAAACATCCAGTGAACATGCACCTGCATATTCTTACCAACAATCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011439-'21-26,'21-24,22-26=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.185 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]