HsaEX0052797 @ hg38
Exon Skipping
Gene
ENSG00000144642 | RBMS3
Description
RNA binding motif single stranded interacting protein 3 [Source:HGNC Symbol;Acc:HGNC:13427]
Coordinates
chr3:29936086-30004076:+
Coord C1 exon
chr3:29936086-29936196
Coord A exon
chr3:29988143-29988223
Coord C2 exon
chr3:30003856-30004076
Length
81 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGATTCTCTCTAGTAT
3' ss Score
9.01
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCTGTGATTACACCAACCATGGACCATCCCATGTCAATGCAGCCAGCCAACATGATGGGCCCACTGACACAGCAGATGAATCACCTTTCGTTGGGCACAACAGGAACG
Seq A exon
TATATGACTGCTGCTGCTCCTATGCAAGGGACCTACATTCCTCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq C2 exon
ACCATAAACAGGACTGAAGAATGTCTGTCTGAATCTTTGCCTTGAATGAAGAAACTTCATTGAACAAGAAGTTGGCTTCCAGTTTGCACAGACGTCAATGGAATGCATTTTTTTGTTGTTGTTGTTGTTTTTTTTTTAGTGTTATACCTTACCCAATGAAAGCAAAGTTTTTATGTGCTGTGCAAATGGTCTTCATGTGGTCTGACAATTTATTTTTGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144642_MULTIEX5-7/8=4-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.829 A=0.284 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
ENST00000636680fB24303
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCCCATGTCAATGCAGCCAG
R:
TGTGCAAACTGGAAGCCAACT
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development