DreEX0061393 @ danRer10
Exon Skipping
Gene
ENSDARG00000044574 | rbms3
Description
RNA binding motif, single stranded interacting protein [Source:ZFIN;Acc:ZDB-GENE-060929-244]
Coordinates
chr16:39696293-39702496:-
Coord C1 exon
chr16:39702386-39702496
Coord A exon
chr16:39696864-39696947
Coord C2 exon
chr16:39696293-39696420
Length
84 bp
Sequences
Splice sites
3' ss Seq
TGTTTTAATTTTGTTTCCAGTAC
3' ss Score
7.59
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
Exon sequences
Seq C1 exon
GGTGCTGTTATAACGCCAACCATGGACCACACCATCTCCATGCAGCCTGCGAACATGATGGGACCCCTCACCCAGCAGATGAACCACCTGTCTCTGGGCACCACTGGCACT
Seq A exon
TACATGACTGCGGCTGCTGCTCCTATGCAGGGGACCTATATTCCCCAGTACACTGCGGTGCCTGCCTCTGCTGTCTCAGTGGAG
Seq C2 exon
GGAGTGGTGACGGATGCTTCTCCACAGAGCGTTCCAGCCTCGTCACAGGACGCCAGCGGGCAGCAACAGGCTCTGGGTGTGGAAAACACCAGCGATCACGCGCCCACCTACTCTTTTCAGCCCGCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000044574_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.649 A=0.036 C2=0.977
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACCCAGCAGATGAACCAC
R:
GGCTGAAAAGAGTAGGTGGGC
Band lengths:
167-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]