MmuEX0039212 @ mm10
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116582738-116636479:-
Coord C1 exon
chr9:116636369-116636479
Coord A exon
chr9:116586018-116586095
Coord C2 exon
chr9:116582738-116582865
Length
78 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTGATTTTCTCTAGTAT
3' ss Score
8.82
5' ss Seq
GAAGTAAGT
5' ss Score
9.82
Exon sequences
Seq C1 exon
GGTGCTGTGATCACACCCGCCGTGGACCACCCCATGTCAATGCAGCCAACTAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACAGCAGGAACG
Seq A exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
Seq C2 exon
GGTGTTGTTGCTGATACCTCTCCCCAGACGGTGGCCCCCTCATCCCAGGACAGCAGTGGTCAGCAGCAACAGTTAGCAGTGGACACACCCAGTGAACACGCACCGGCATACTCCTTCCAACAGTCCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX1-4/5=2-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=0.169 C2=0.998
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTAACATCGTGGGTCCCCTGA
R:
GTTGGAAGGAGTATGCCGGTG
Band lengths:
183-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types