MmuEX0039211 @ mm9
Exon Skipping
Gene
ENSMUSG00000039607 | Rbms3
Description
RNA binding motif, single stranded interacting protein [Source:MGI Symbol;Acc:MGI:2444477]
Coordinates
chr9:116495136-116545597:-
Coord C1 exon
chr9:116545487-116545597
Coord A exon
chr9:116537008-116537055
Coord C2 exon
chr9:116495136-116495213
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTTTTCATTCCAAGATT
3' ss Score
6.86
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGCTGTGATCACACCCGCCGTGGACCACCCCATGTCAATGCAGCCAACTAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACAGCAGGAACG
Seq A exon
ATTCAATCCCAAGACAGAATTATGGTACTTCACCAGCTGTTATGTCAG
Seq C2 exon
TATATGACTGCTGCTCCTATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000039607_MULTIEX1-5/7=4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.600 A=0.000 C2=0.154
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCACCCCATGTCAATG
R:
AGGCGTGTACTGGGGAATGTA
Band lengths:
141-189
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: