RnoEX0074774 @ rn6
Exon Skipping
Gene
ENSRNOG00000025881 | Rbms3
Description
RNA binding motif, single stranded interacting protein 3 [Source:RGD Symbol;Acc:1588240]
Coordinates
chr8:124844235-124892718:-
Coord C1 exon
chr8:124892608-124892718
Coord A exon
chr8:124884177-124884224
Coord C2 exon
chr8:124844235-124844312
Length
48 bp
Sequences
Splice sites
3' ss Seq
ATGCTCTTTTTCATTCCAAGATT
3' ss Score
6.86
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GGTGCTGTGATCACACCCACCATGGACCACCCCATGTCAATGCAGCCAACCAACATCGTGGGTCCCCTGACGCAGCAGATGAACCATCTTTCCCTGGGGACGGCAGGAACG
Seq A exon
ATTCAATCCCAAGACAGAATTATGGTACTTCACCAGCTGTTGTGTCAG
Seq C2 exon
TATATGACCGCTGCTCCCATGCAAGGGACCTACATTCCCCAGTACACGCCTGTGCCTCCGACAGCTGTTTCTATTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025881_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.749 A=0.086 C2=0.168
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGCAGCCAACCAACATCG
R:
TAGAAACAGCTGTCGGAGGCA
Band lengths:
147-195
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]