HsaEX0052831 @ hg19
Exon Skipping
Gene
ENSG00000135870 | RC3H1
Description
ring finger and CCCH-type domains 1 [Source:HGNC Symbol;Acc:29434]
Coordinates
chr1:173939643-173947758:-
Coord C1 exon
chr1:173947626-173947758
Coord A exon
chr1:173941647-173941765
Coord C2 exon
chr1:173939643-173939755
Length
119 bp
Sequences
Splice sites
3' ss Seq
CATTATCATTGGTTGTATAGATG
3' ss Score
3.95
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
Exon sequences
Seq C1 exon
TTGCAGACTCCAGCCTCTTTTGCACAGAGTGTTCAGGAACTAACAATTGCTCTCCAGCGAACTGGAGACCCAGCAAACTTGAACCGACTAAGACCCCATTTGGAGCTGTTAGCAAACATTGACCCTAGTCCAG
Seq A exon
ATGCTCCTCCTCCTACTTGGGAACAGCTGGAAAATGGGCTGGTTGCTGTGCGTACAGTGGTACATGGGCTGGTTGATTATATCCAGAACCACAGCAAAAAAGGAGCAGATCAGCAGCAG
Seq C2 exon
CCTCCACAGCATAGCAAATACAAAACATACATGTGTCGAGATATGAAGCAGAGAGGAGGATGCCCTCGTGGGGCCAGCTGTACATTTGCACACTCACAGGAGGAACTGGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000135870_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.317 A=0.438 C2=0.638
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PD(2.3=2.5)
C2:
PF0064219=zf-CCCH=WD(100=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGACTCCAGCCTCTTTTG
R:
TCCAGTTCCTCCTGTGAGTGT
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)