GgaEX1048712 @ galGal3
Exon Skipping
Gene
ENSGALG00000004587 | RC3H1
Description
NA
Coordinates
chr8:7672485-7676484:+
Coord C1 exon
chr8:7672485-7672617
Coord A exon
chr8:7674690-7674808
Coord C2 exon
chr8:7676372-7676484
Length
119 bp
Sequences
Splice sites
3' ss Seq
GTTTCCTGCTAATATTATAGATG
3' ss Score
6.93
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
TTGCAGACCCCAGCCTCATTTGCACAGAGTGTTCAGGAGTTAACTATTGCTCTTCAGAGGACTGGAGATCCAGCTAATCTGAATCGTCTTCGACCTCACCTTGAGCTCCTGGCAAATATTGATCCCAGCCCAG
Seq A exon
ATGCTCCACCTCCAACGTGGGAACAACTGGAAAATGGGCTAGTTGCTGTAAGGACTGTGGTTCATGGCTTAGTTGATTATATCCAGAATCACAGCAAGAAAGGAACGGATCAGCAACAG
Seq C2 exon
CCTCCTCAGCACAGCAAATACAAGACGTACATGTGCCGAGACATGAAACAGAGAGGAGGATGCCCCCGAGGGGCCAGCTGCACCTTTGCACATTCACAGGAGGAGCTAGAGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004587-'7-10,'7-8,8-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=0.569 C2=0.711
Domain overlap (PFAM):
C1:
PF051387=PaaA_PaaC=PD(11.0=24.4)
A:
NO
C2:
PF0064219=zf-CCCH=WD(100=71.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTGCAGACCCCAGCCTCATTT
R:
CTAGCTCCTCCTGTGAATGTGC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]