DreEX0061446 @ danRer10
Exon Skipping
Gene
ENSDARG00000062550 | rc3h1
Description
ring finger and CCCH-type domains 1 [Source:ZFIN;Acc:ZDB-GENE-050208-702]
Coordinates
chr22:15970124-15972838:+
Coord C1 exon
chr22:15970124-15970256
Coord A exon
chr22:15970356-15970474
Coord C2 exon
chr22:15972726-15972838
Length
119 bp
Sequences
Splice sites
3' ss Seq
ATTTGTGTTTGTGCTAATAGATG
3' ss Score
6.71
5' ss Seq
CAGGTCTGT
5' ss Score
6.84
Exon sequences
Seq C1 exon
CTTCAGACTCCAGCATCTTTCGCTCAGAGCGTGCAGGAGCTTACCATCGCCCTGCAGAGAACCGGAGATCCTGCCAATCTGAACCGCCTCAGGCCTCATTTGGAGCTGTTGGCCGACATCGACCCCAGTCCAG
Seq A exon
ATGCCCCTGCGCCCACATGGGAGCAGTTGGCTAAAGGGTTGGAGGCGGTACGGACTGTTGTTCATGGACTGGTGGATTTCATCCAGAACCACAGCAAGAAGGGAGGGGATCAGCAGCAG
Seq C2 exon
CCTCCTCAGCACAGCAAATACAAGACCTACATGTGCCGTGACATGAAGCAGAAGGGTGGCTGTCCCCGTGGAGCGAGCTGCACCTTTGCTCACTCTCAGGACGAGCTAGAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000062550-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.400 A=0.550 C2=0.711
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0064219=zf-CCCH=WD(100=71.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGACTCCAGCATCTTTCGC
R:
CGTCCTGAGAGTGAGCAAAGG
Band lengths:
234-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]